Process interaction data for visualization — process_interaction_data • ezGenomeTracks

This function processes interaction data for visualization with geom_link. It formats the data for use with ggplot2.

Usage

process_interaction_data(
  gr,
  anchor1 = "anchor1",
  anchor2 = "anchor2",
  score = "score"
)

Arguments

gr: A GRanges or GInteractions object with interaction data
anchor1: Column name for the first anchor (default: "anchor1")
anchor2: Column name for the second anchor (default: "anchor2")
score: Column name for interaction score (default: "score")

Value

A data frame with interaction information

Examples

if (FALSE) { # \dontrun{
library(rtracklayer)
gr <- import("interactions.bedpe")
interaction_data <- process_interaction_data(gr)
} # }